A Comprehensive Investigation of Potential Novel Marine Psychrotolerant Actinomycetes sp. Isolated from the Bay-of-Bengal

Page: [271 - 282] Pages: 12

  • * (Excluding Mailing and Handling)

Abstract

Background: This study was carried out to classify the diversity of the deep marine psychrotolerant actinomycetes sp. nov., in the Bay of Bengal and exploit the production of coldactive industrial and pharmaceutical biomolecules.

Objective: 1) Characterization, optimum the growth conditions and classify the diversity of the novel isolated deep marine psychrotolerant actinomycetes sp from the Bay-of-Bengal. 2) Screening for industrially important biocatalysts and determine the antimicrobial activities against the five dreadful pathogens. 3) The differential expression profiling of the candidate genes to regulate the biosynthesis of selected enzymes.

Methods: The cold-adapted actinomycetes were isolated from the deep marine water collections at 1200 mts below the surface in Bay-of-Bengal. The phenotypic and genotypic characterizations have been carried out to understand the persistent diversity of this novel marine psychrotolerant actinomycetes species. The production of cold-active enzymes, such as amylase, cellulase, lipase, pectinase, and L-asparaginase, were screened and the expression profiling genes were determined by using qRT PCR. The antibacterial and antifungal activities have also been investigated.

Results: A total number of 37 novel actinomycetes were isolated and the phenotypic and genotypic characterizations identified the genus, dominated by Streptomyces (17 distinct sub-groups) as the major group, followed by Micromonospora, Actinopolyspora, Actinosynnema, Streptoverticillium, Saccharopolyspora, Nocardiopsis, and Nocardia. The optimum growth and abundant mycelium formation are observed at 15°C to 20°C and also capability for thriving at 4°C. All the isolates exhibited a significant role in the production of biocatalysts, and the antagonistic activities were also noted against five major selected pathogens.

Conclusion: The Streptomyces from the Bay-of-Bengal have high biosynthetic potential and can serve as a good resource for the exploration of bioactive natural products.

Keywords: Antimicrobial activity, psychrotolerant, actinomycetes, metabolites, psychrozyme, streptomyces.

Graphical Abstract

[1]
Chater, K.F. Streptomyces inside-out: a new perspective on the bacteria that provide us with antibiotics. Philos. Trans. R. Soc. Lond. B Biol. Sci., 2006, 361(1469), 761-768.
[http://dx.doi.org/10.1098/rstb.2005.1758 ] [PMID: 16627293]
[2]
Pulicherla, K.K.; Ghosh, M.; Suresh, P.K.; Rao, K.R.S.S. Psychrozymes- the next generation industrial enzymes. J. Mar. Sci. Res. Dev., 2011, 1, 102.
[http://dx.doi.org/10.4172/2155-9910.1000102]
[3]
Magarvey, N.A.; Keller, J.M.; Bernan, V.; Dworkin, M.; Sherman, D.H. Isolation and characterization of novel marine-derived actinomycete taxa rich in bioactive metabolites. Appl. Environ. Microbiol., 2004, 70(12), 7520-7529.
[http://dx.doi.org/10.1128/AEM.70.12.7520-7529.2004 ] [PMID: 15574955]
[4]
Ellaiah, P.; Reddy, A.P.C. Isolation of actinomycetes from marine sediments of Visakhapatnam, east coast of India. Indian J. Geo-Mar. Sci., 1987, 16, 134-135.
[5]
Jensen, P.R.; Mincer, T.J.; Williams, P.G.; Fenical, W. Marine actinomycete diversity and natural product discovery. Antonie van Leeuwenhoek, 2005, 87(1), 43-48.
[http://dx.doi.org/10.1007/s10482-004-6540-1 ] [PMID: 15726290]
[6]
Castillo, U.; Harper, J.K.; Strobel, G.A.; Sears, J.; Alesi, K.; Ford, E.; Lin, J.; Hunter, M.; Maranta, M.; Ge, H.; Yaver, D.; Jensen, J.B.; Porter, H.; Robison, R.; Millar, D.; Hess, W.M.; Condron, M.; Teplow, D. Kakadumycins, novel antibiotics from Streptomyces sp NRRL 30566, an endophyte of Grevillea pteridifolia. FEMS Microbiol. Lett., 2003, 224(2), 183-190.
[http://dx.doi.org/10.1016/S0378-1097(03)00426-9 ] [PMID: 12892881]
[7]
Zin, N.M.; Sarmin, N.I.M.; Ghadin, N.; Basri, D.F.; Sidik, N.M.; Hess, W.M.; Strobel, G.A. Bioactive endophytic streptomycetes from the Malay Peninsula. FEMS Microbiol. Lett., 2007, 274(1), 83-88.
[http://dx.doi.org/10.1111/j.1574-6968.2007.00819.x ] [PMID: 17608698]
[8]
Hütz, A.; Schubert, K.; Overmann, J. Thalassospira sp. isolated from the oligotrophic eastern Mediterranean Sea exhibits chemotaxis toward inorganic phosphate during starvation. Appl. Environ. Microbiol., 2011, 77(13), 4412-4421.
[http://dx.doi.org/10.1128/AEM.00490-11 ] [PMID: 21602377]
[9]
James, G. Universal bacterial identification by PCR and DNA sequencing of 16S rRNA gene. PCR for clinical microbiology; Schuller, M., Ed.; New York, 2010, pp. 209-214.
[http://dx.doi.org/10.1007/978-90-481-9039-3_28]
[10]
Proença, D.N.; Francisco, R.; Santos, C.V.; Lopes, A.; Fonseca, L.; Abrantes, I.M.O.; Morais, P.V.; Morais, P.V. Diversity of bacteria associated with Bursaphelenchus xylophilus and other nematodes isolated from Pinus pinaster trees with pine wilt disease. PLoS One, 2010, 5(12) e15191
[http://dx.doi.org/10.1371/journal.pone.0015191 ] [PMID: 21151611]
[11]
Gascuel, O. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol. Biol. Evol., 1997, 14(7), 685-695.
[http://dx.doi.org/10.1093/oxfordjournals.molbev.a025808 ] [PMID: 9254330]
[12]
Chevenet, F.; Brun, C.; Bañuls, A.L.; Jacq, B.; Christen, R. TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics, 2006, 7, 439.
[http://dx.doi.org/10.1186/1471-2105-7-439 ] [PMID: 17032440]
[13]
Mailund, T.; Brodal, G.S.; Fagerberg, R.; Pedersen, C.N.S.; Phillips, D. Recrafting the neighbor-joining method. BMC Bioinformatics, 2006, 7, 29.
[http://dx.doi.org/10.1186/1471-2105-7-29 ] [PMID: 16423304]
[14]
Dereeper, A.; Audic, S.; Claverie, J.M.; Blanc, G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol. Biol., 2010, 10, 8.
[http://dx.doi.org/10.1186/1471-2148-10-8 ] [PMID: 20067610]
[15]
Gulati, R.; Saxena, R.K.; Gupta, R. A rapid plate assay for screening L-asparaginase producing micro-organisms. Lett. Appl. Microbiol., 1997, 24(1), 23-26.
[http://dx.doi.org/10.1046/j.1472-765X.1997.00331.x ] [PMID: 9024001]
[16]
Basha, N.B.; Rekha, R.; Komala, M.; Ruby, R. Production of extracellular anti-leukaemic enzyme lasparaginase from marine actinomycetes by solid state and submerged fermentation, purification and characterization. Trop. J. Pharm. Res., 2009, 8, 353-360.
[http://dx.doi.org/10.4314/tjpr.v8i4.45230]
[17]
Landa, B.B.; Hervas, A.; Bettiol, W.; Jimenez-Diaz, R.M. Antagonistic activity of bacteria from Chickpea rhizosphere against Fusarium oxysporum f. sp. ciceris. Phytoparasitica, 1997, 25, 305-318.
[http://dx.doi.org/10.1007/BF02981094]
[18]
Ghosh, M.; Pulicherla, K.K.; Rekha, V.P.B.; Vijaya, A.; Rao, K.R.S. Optimization of process condition for lactose hydrolysis in paneer whey with cold adaptive β-galactosidase from psychrophilic Thalassospira frigidphilosprofundus. Int. J. Dairy Technol., 2013, 66, 256-263.
[http://dx.doi.org/10.1111/1471-0307.12020]
[19]
Pulicherla, K.K.; Kumar, P.S.; Manideep, K.; Rekha, V.P.B.; Ghosh, M.; Sambasiva, R.K.R. Statistical approach for the enhanced production of cold-active β-galactosidase from Thalassospira frigidphilosprofundus: a novel marine psychrophile from deep waters of Bay of Bengal. Prep. Biochem. Biotechnol., 2013, 43(8), 766-780.
[http://dx.doi.org/10.1080/10826068.2013.773341 ] [PMID: 23876137]
[20]
de Vries, D.J.; Beart, P.M. Fishing for drugs from the sea: status and strategies. Trends Pharmacol. Sci., 1995, 16(8), 275-279.
[http://dx.doi.org/10.1016/S0165-6147(00)89045-8 ] [PMID: 7482989]
[21]
Kokare, C.R.; Mahadik, K.R.; Kadam, S.S. Isolation of bioactive marine actinomycetes from sediments isolated from Goa and Maharashtra coastline (west coast of India). Curr. Sci., 2004, 33, 248-256.
[22]
Ramesh, S.; Rajesh, M.; Mathivanan, N. Characterization of a thermostable alkaline protease produced by marine Streptomyces fungicidicus MML1614. Bioprocess Biosyst. Eng., 2009, 32(6), 791-800.
[http://dx.doi.org/10.1007/s00449-009-0305-1 ] [PMID: 19234861]
[23]
Mincer, T.J.; Jensen, P.R.; Kauffman, C.A.; Fenical, W. Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments. Appl. Environ. Microbiol., 2002, 68(10), 5005-5011.
[http://dx.doi.org/10.1128/AEM.68.10.5005-5011.2002 ] [PMID: 12324350]
[24]
Ramesh, S.; Mathivanan, N. Screening of marine actinomycetes isolated from the Bay of Bengal, India for antimicrobial activity and industrial enzymes. World J. Microbiol. Biotechnol., 2009, 25, 2103-2111.
[http://dx.doi.org/10.1007/s11274-009-0113-4]
[25]
Cotarlet, M.; Negoita, T.; Bahrim, G.; Stougaard, P. Cold adapted amylase and protease from new Streptomyces 4 alga Antarctic strain. Innov. Rom. Food Biotechnol., 2009, 5, 23-30.
[26]
Atta, H.M.; Ahmad, M.S. Antimycin- A antibiotic biosynthesis produced by Streptomyces sp. AZ-AR-262: taxonomy, fermentation, purification and biological activities. Aust. J. Basic Appl. Sci., 2009, 3, 126-135.
[27]
Baltz, R.H. Renaissance in antibacterial discovery from actinomycetes. Curr. Opin. Pharmacol., 2008, 8(5), 557-563.
[http://dx.doi.org/10.1016/j.coph.2008.04.008 ] [PMID: 18524678]
[28]
Zheng, Z.; Zeng, W.; Huang, Y.; Yang, Z.; Li, J.; Cai, H.; Su, W. Detection of antitumor and antimicrobial activities in marine organism associated actinomycetes isolated from the Taiwan Strait, China. FEMS Microbiol. Lett., 2000, 188(1), 87-91.
[http://dx.doi.org/10.1111/j.1574-6968.2000.tb09173.x ] [PMID: 10867239]
[29]
Castresana, J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol., 2000, 17(4), 540-552.
[http://dx.doi.org/10.1093/oxfordjournals.molbev.a026334 ] [PMID: 10742046]
[30]
Peela, S.; Kurada, B.V.V.S.N.; Terli, R. Study on antagonistic marine actinomycetes from the Bay of Bengal. World J. Microbiol. Biotechnol., 2005, 2, 583-585.
[http://dx.doi.org/10.1007/s11274-004-3493-5]
[31]
Leon, J.; Liza, L.; Soto, I.; Cuadra, D.; Patino, L.; Zerpa, R. Bioactive actinomycetes of marine sediment from the central coast of Peru. Revi Peri Biol., 2007, 14, 259-270.
[32]
Selvam, K.; Vishnupriya, B.; Bose, C.V.S. Screening and quantification of marine Actinomycetes producing industrial enzymes amylase, cellulase and lipase from south coast of India. Int. J. Pharm. Biol. Arch., 2011, 2, 1481-1487.
[33]
Kokare, C.R.; Mahadik, K.R.; Kadam, S.S.; Chopade, B.A. Isolation, characterization and antimicrobial activity of marine halophilic Actinopolyspora species AH1 from the west coast of India. Curr. Sci., 2004, 86, 593-597.
[34]
Hosaka, T.; Ohnishi-Kameyama, M.; Muramatsu, H.; Murakami, K.; Tsurumi, Y.; Kodani, S.; Yoshida, M.; Fujie, A.; Ochi, K. Antibacterial discovery in actinomycetes strains with mutations in RNA polymerase or ribosomal protein S12. Nat. Biotechnol., 2009, 27(5), 462-464.
[http://dx.doi.org/10.1038/nbt.1538 ] [PMID: 19396160]
[35]
Ahmad, M.S.; El-Gendy, A.O.; Ahmed, R.R.; Hassan, H.M.; El-Kabbany, H.M.; Merdash, A.G. Exploring the antimicrobial and antitumor potentials of Streptomyces sp. AGM12-1 isolated from Egyptian soil. Front. Microbiol., 2017, 8, 438.
[http://dx.doi.org/10.3389/fmicb.2017.00438 ] [PMID: 28348553]
[36]
Woese, C.R. Bacterial evolution. Microbiol. Rev., 1987, 51(2), 221-271.
[http://dx.doi.org/10.1128/MMBR.51.2.221-271.1987 ] [PMID: 2439888]
[37]
Deshmukh, M.B.; Sridhar, K.R. Distribution and antimicrobial activity of actinomycetes of a freshwater coastal stream. Asian J. Microbiol. Biotechnol. Environ. Sci., 2002, 4, 335-340.
[38]
Subramani, R.; Aalbersberg, W. Marine actinomycetes: an ongoing source of novel bioactive metabolites. Microbiol. Res., 2012, 167(10), 571-580.
[http://dx.doi.org/10.1016/j.micres.2012.06.005 ] [PMID: 22796410]
[39]
Ghosh, M.; Sharma, N.; Singh, A.K.; Gera, M.; Pulicherla, K.K.; Jeong, D.K. Transformation of animal genomics by next-generation sequencing technologies: a decade of challenges and their impact on genetic architecture. Crit. Rev. Biotechnol., 2018, 38(8), 1157-1175.
[http://dx.doi.org/10.1080/07388551.2018.1451819 ] [PMID: 29631431]
[40]
Ghosh, M.; Pulicherla, K.K.; Rekha, V.P.B.; Raja, P.K.; Sambasiva Rao, K.R. Cold active β-galactosidase from Thalassospira sp. 3SC-21 to use in milk lactose hydrolysis: a novel source from deep waters of Bay-of-Bengal. World J. Microbiol. Biotechnol., 2012, 28(9), 2859-2869.
[http://dx.doi.org/10.1007/s11274-012-1097-z ] [PMID: 22806727]
[41]
Kumar, P.S.; Pulicherla, K.; Ghosh, M.; Kumar, A.; Rao, K.S. Structural prediction and comparative docking studies of psychrophilic β- Galactosidase with lactose, ONPG and PNPG against its counter parts of mesophilic and thermophilic enzymes. Bioinformation, 2011, 6(8), 311-314.
[http://dx.doi.org/10.6026/97320630006311 ] [PMID: 21769193]